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身為一個熱愛美食、喜歡在城市裡挖掘驚喜的人,臺中公益路一直是我最常出沒的地方之一。這條路可說是「臺中人的美食戰場」,從精緻西餐到創意火鍋,從日式丼飯到義式早午餐,每走幾步,就會有完全不同的特色料理餐廳。 這次我特別花了一整個月,實際造訪了公益路上十間口碑不錯的餐廳。有的是網友熱推的打卡名店,也有隱藏在巷弄裡的小驚喜。我以環境氛圍、口味表現、價格CP值與再訪意願為基準,整理出這篇實測評比。希望能幫正在猶豫去哪裡吃飯的你,找到那一間「吃完會想再來」的餐廳。 評比標準與整理方向
這次我走訪的10家餐廳橫跨不同料理類型,從高質感牛排館到巷弄系早午餐,每一間都有自己獨特的風格。為了讓整體比較更客觀,我依照以下四大面向進行評比,並搭配實際用餐體驗來打分。
整體而言,我希望這份評比不只是「哪家好吃」,而是幫你在不同情境下(約會、家庭聚餐、朋友小聚、商業午餐)都能快速找到合適的選擇。畢竟,美食不只是味覺的滿足,更是一段段與朋友共享的生活記憶。 10間臺中公益路餐廳評比懶人包公益路向來是臺中人聚餐的首選地段,從火鍋、燒肉到中式料理與早午餐,每走幾步就有驚喜。以下是我實際造訪過的10間代表性餐廳清單,橫跨平價、創意、高級各路風格。
一頭牛日式燒肉|炭香濃郁的和牛饗宴,約會聚餐首選
走在公益路上,很難不被 一頭牛日式燒肉 的木質外觀吸引。低調卻不失質感的門面,搭配昏黃燈光與暖色調的內裝,讓人一進門就感受到濃濃的日式職人氛圍。店內空間不大,但桌距規劃得宜,每桌皆設有獨立排煙設備,烤肉時完全不怕滿身油煙味。 餐點特色
一頭牛的靈魂,絕對是他們招牌的「三國和牛拼盤」。 用餐體驗整體節奏掌握得非常好。店員會在你剛想烤下一片肉時貼心遞上夾子、幫忙換烤網,讓人完全不用分心。整場用餐過程就像一場表演,從視覺、嗅覺到味覺都被滿足。 綜合評分
地址:408臺中市南屯區公益路二段162號電話:04-23206800 官網:http://www.marihuana.com.tw/yakiniku/index.html 小結語一頭牛日式燒肉不僅是「吃肉的地方」,更像是一場五感盛宴。從進門那一刻到最後一道甜點,都能感受到他們對細節的用心。 TANG Zhan 湯棧|文青系火鍋代表,麻香湯底與視覺美感並重
在公益路這條美食戰線上,TANG Zhan 湯棧 是讓人一眼就會想走進去的那一種。 餐點特色
湯棧最有名的當然是它的「麻香鍋」。 用餐體驗整體氛圍比一般火鍋店更有質感。 綜合評分
地址:408臺中市南屯區公益路二段248號電話:04-22580617 官網:https://www.facebook.com/TangZhan.tw/ 小結語TANG Zhan 湯棧 把傳統火鍋做出新的樣貌保留臺式鍋物的溫度,又結合現代風格與細節服務,讓吃鍋這件事變得更有品味。 如果你想找一間兼具「好吃、好拍、好放鬆」的火鍋店,湯棧會是公益路上最有風格的選擇之一。 NINI 尼尼臺中店|明亮寬敞的義式早午餐天堂
如果說前兩間是肉食愛好者的天堂,那 NINI 尼尼臺中店 絕對是想放鬆、聊聊天的好地方。餐廳外觀以白色系與大片玻璃窗為主,陽光灑進室內,讓人一踏入就有種度假般的輕盈感。假日早午餐時段特別熱鬧,建議提早訂位。 餐點特色
NINI 的菜單融合義式與臺灣人口味,選擇多樣且份量十足。主打的 松露燉飯 濃郁卻不膩口,米芯保留微Q口感;而 香蒜海鮮義大利麵 則以新鮮白蝦、花枝與淡菜搭配微辣蒜香,口感層次豐富。 用餐體驗店內氣氛輕鬆不拘謹,無論是一個人帶電腦工作、或朋友聚餐,都能找到舒服角落。餐點上桌速度穩定,服務人員態度親切、補水與收盤都非常主動。整體節奏讓人覺得「時間變慢了」,很適合想遠離忙碌日常的人。 綜合評分
地址:40861臺中市南屯區公益路二段18號電話:04-23288498 小結語NINI 尼尼臺中店是一間能讓人放下手機、慢慢吃飯的餐廳。餐點不追求浮誇,而是以「剛剛好」的份量與風味,陪伴每個平凡午後。如果你在找一間能邊吃邊聊天、拍照也漂亮的早午餐店,NINI 會是你在公益路上最不費力的幸福選擇。 加分100%浜中特選昆布鍋物|平價卻用心的湯頭系火鍋,家庭聚餐好選擇
在公益路這條高質感餐廳林立的戰場上,加分100%浜中特選昆布鍋物 走的是截然不同的路線。它沒有浮誇的裝潢、也沒有高價位的套餐,但靠著實在的湯頭與親切的服務,默默吸引許多回頭客。每到用餐時間,總能看到家庭或情侶三兩成群地圍著鍋邊聊天。 餐點特色
主打 北海道浜中昆布湯底,湯頭清澈卻不單薄,越煮越能喝出海藻與柴魚的自然香氣。 用餐體驗整體氛圍偏家庭取向,桌距寬敞、座位舒適,帶小孩來也不覺擁擠。店員態度親切,補湯、收盤都很勤快,給人一種「被照顧著」的安心感。 綜合評分
地址:403臺中市西區公益路288號電話:0910855180 小結語加分100%浜中特選昆布鍋物是一間「不浮誇、但會讓人想再訪」的火鍋店。它不追求豪華擺盤,而是用最簡單的湯頭與新鮮食材,傳遞出家常卻不平凡的溫度。 印月餐廳|中式料理的藝術演繹,宴客與家庭聚會首選
說到臺中公益路的中式料理代表,印月餐廳 絕對是榜上有名。這間開業多年的餐廳以「中菜西吃」的概念聞名,把傳統中式料理以現代手法重新詮釋。從建築外觀到餐具擺設,每個細節都散發著低調的典雅氣息。 餐點特色
印月最令人印象深刻的是他們將傳統中菜融入創意手法。 用餐體驗服務方面完全對得起餐廳的高級定位。從入座、點餐到上菜節奏,都拿捏得恰如其分。每道菜都會有服務人員細心介紹食材與吃法,讓人感受到「被款待」的尊榮感。 綜合評分
地址:408臺中市南屯區公益路二段818號電話:0422511155 小結語印月餐廳是一間「不只吃飯,更像品味生活」的地方。 KoDō 和牛燒肉|極致職人精神,專為儀式感與頂級味覺而生
若要形容 KoDō 和牛燒肉 的用餐體驗,一句話足以總結——「像在欣賞一場關於肉的表演」。 餐點特色
這裡主打 日本A5和牛冷藏肉,以「精切厚燒」的方式呈現。 用餐體驗KoDō 的最大特色是「儀式感」。 綜合評分
地址:403臺中市西區公益路260號電話:0423220312 官網:https://www.facebook.com/kodo2018/ 小結語KoDō 和牛燒肉不是日常餐廳,而是一場體驗。 永心鳳茶|在茶香裡用餐的優雅時光,臺味早午餐的新詮釋
走進 永心鳳茶公益店,彷彿進入一間有氣質的茶館。 餐點特色
永心鳳茶的餐點結合中式靈魂與西式擺盤,無論是「炸雞腿飯」還是「紅玉紅茶拿鐵」,都能讓人感受到熟悉卻不平凡的味道。 用餐體驗店內服務人員態度溫和,對茶品介紹詳盡。上餐節奏剛好,不急不徐。 綜合評分
地址:40360臺中市西區公益路68號三樓(勤美誠品)電話:0423221118 小結語永心鳳茶讓人重新定義「臺味」。 三希樓|老饕級江浙功夫菜,穩重又帶人情味的中式饗宴
位於公益路上的 三希樓 是許多臺中老饕的口袋名單。 餐點特色
三希樓的菜色以 江浙與港式料理 為主,兼顧傳統與現代風味。 用餐體驗三希樓的服務給人一種老派但貼心的感覺。 綜合評分
地址:408臺中市南屯區公益路二段95號電話:0423202322 官網:https://www.sanxilou.com.tw/ 小結語三希樓是一間「吃得出功夫」的餐廳。 一笈壽司|低調奢華的無菜單日料,職人手藝詮釋旬味極致
在熱鬧的公益路上,一笈壽司 低調得幾乎不顯眼。 餐點特色
一笈壽司採 Omakase(無菜單料理) 形式,每一餐都由主廚根據當日食材設計。 用餐體驗整場用餐約90分鐘,節奏緩慢但沉穩。 綜合評分
地址:408臺中市南屯區公益路二段25號電話:0423206368 官網:https://www.facebook.com/YIJI.sushi/ 小結語一笈壽司是一間真正讓人「放慢呼吸」的餐廳。 茶六燒肉堂|人氣爆棚的和牛燒肉聖地,肉香與幸福感同時滿分
若要票選公益路上「最難訂位」的餐廳,茶六燒肉堂 絕對名列前茅。 餐點特色
茶六主打 和牛燒肉套餐,價格約落在 $700–$1000 間,份量與品質兼具。 用餐體驗茶六的服務效率相當高。店員親切、換網勤快、補水速度快,整場用餐流程流暢無壓力。 綜合評分
地址:403臺中市西區公益路268號電話:0423281167 官網:https://inline.app/booking/-L93VSXuz8o86ahWDRg0:inline-live-karuizawa/-LUYUEIOYwa7GCUpAFWA 小結語茶六燒肉堂用「穩定品質+輕奢氛圍」抓住了臺中年輕族群的心。 吃完10家公益路餐廳後的心得與結語吃完這十家餐廳後,臺中公益路不只是一條美食街,而是一段生活風景線。 有的餐廳講究細膩與儀式感,像 一頭牛日式燒肉 與 一笈壽司,讓人感受到食材最純粹的美好 有的則以親切與溫度打動人心,像 加分昆布鍋物、永心鳳茶,讓人明白吃飯不只是為了飽足,而是一種被照顧的幸福。 而像茶六燒肉堂、TANG Zhan 湯棧 這類人氣名店,則用穩定的品質與熱絡的氛圍,成為許多臺中人心中「想吃肉就去那裡」的代名詞。 這十家店,構成了公益路最動人的縮影 有華麗的,也有溫柔的;有傳統的,也有創新的。 每一家都在自己的風格裡發光,讓人吃到的不只是料理,而是一種生活的溫度與節奏。 對我而言,這不僅是一場美食旅程,更是一趟關於「臺中味道」的回憶之旅。 FAQ:關於臺中公益路美食常見問題Q1:公益路哪一區的餐廳最集中? Q2:需要提前訂位嗎? 最後的話若要用一句話形容這趟美食之旅,我會說: 加分100%浜中特選昆布鍋物網路評價符合期待嗎? 如果你也和我一樣喜歡用味蕾探索一座城市,那就把這篇公益路美食攻略收藏起來吧。TANG Zhan 湯棧份量足夠嗎? 無論是約會、慶生、家庭聚餐,或只是想犒賞一下辛苦的自己——這條路上永遠會有一間剛剛好的餐廳在等你。一頭牛日式燒肉肉質如何? 下一餐,不妨從這10家開始。一頭牛日式燒肉年末聚餐推薦嗎? 打開手機、約上朋友,讓公益路成為你生活裡最容易抵達的小確幸。NINI 尼尼臺中店適合聚餐嗎? 如果你有私心愛店,也歡迎留言分享,一笈壽司年末聚餐推薦嗎? 你的推薦,可能讓我下一趟美食旅程變得更精彩。印月餐廳尾牙聚餐表現如何? The decline of Menin in the hypothalamus may contribute to physiological aging, affecting cognition, bone mass, skin thickness, and lifespan. A recent study using mice suggests that a simple dietary supplement of an amino acid may help mitigate some of these age-related changes. Loss of Menin helps drive the aging process, and dietary supplement can reverse it in mice. Cognition, bone mass, skin thickness, and lifespan are all affected by Menin’s decline. According to a new scientific study, the decline in the hypothalamic Menin may play a key role in aging. The findings reveal a previously unknown driver of physiological aging and suggest that supplementation with a simple amino acid may mitigate some age-related changes. The research, by Lige Leng of Xiamen University, Xiamen, China, and colleagues, was published on March 16th in the open access journal PLOS Biology. The hypothalamus has been recognized as a key mediator of physiological aging, through an increase in the process of neuroinflammatory signaling over time. In turn, inflammation promotes multiple age-related processes, both in the brain and the periphery. Researchers find that the loss of a hypothalamic hormone helps drive the aging process, and a supplement can help reverse it in mice. Credit: Lige Leng, Ziqi Yuan and Jie Zhang, 2023, PLOS Biology, CC-BY 4.0 Recently, Leng and colleagues showed that Menin, a hypothalamic protein, is a key inhibitor of hypothalamic neuroinflammation, leading them to ask what role Menin may play in aging. Here, they observed that the level of Menin in the hypothalamus, but not astrocytes or microglia, declines with age. To explore this decline, they created conditional knockout mice, in which Menin activity could be inhibited. They found that reduction of Menin in younger mice led to an increase in hypothalamic neuroinflammation, aging-related phenotypes including reductions in bone mass and skin thickness, cognitive decline, and modestly reduced lifespan. Another change induced by loss of Menin was a decline in levels of the amino acid D-serine, known to be a neurotransmitter and sometimes used as a dietary supplement found in soybeans, eggs, fish, and nuts. The authors showed this decline was due to loss of activity of an enzyme involved in its synthesis (which was in turn regulated by Menin). The hypothalamus is a small but essential part of the brain located at the base, above the brainstem, responsible for regulating a wide range of bodily functions. It acts as a bridge between the nervous and endocrine systems, helping to maintain homeostasis by receiving input from various regions of the brain and the body. The hypothalamus regulates body temperature, hunger, thirst, sleep, mood, and hormone production, and plays a role in the body’s response to stress and controlling the release of hormones from the pituitary gland. Overall, the hypothalamus is critical for maintaining the body’s balance and health. Reversing Aging Through Menin Restoration Could reversing age-related Menin loss reverse signs of physiological aging? To test that, the authors delivered the gene for Menin into the hypothalamus of elderly (20-month-old) mice. Thirty days later, they found improved skin thickness and bone mass, along with better learning, cognition, and balance, which correlated with an increase in D-serine within the hippocampus, a central brain region important for learning and memory. Remarkably, similar benefits on cognition, though not on the peripheral signs of aging, could be induced by three weeks of dietary supplementation with D-serine. There is much left to be learned about Menin’s role in aging, including the upstream processes that lead to its decline, and there is much to learn about the potential for exploiting this pathway, including how much phenotypic aging can be slowed, and for how long, and whether supplementation with D-serine may trigger other changes, yet to be discovered. Nonetheless, Leng said, “We speculate that the decline of Menin expression in the hypothalamus with age may be one of the driving factors of aging, and Menin may be the key protein connecting the genetic, inflammatory, and metabolic factors of aging. D-serine is a potentially promising therapeutic for cognitive decline.” Leng adds, “Ventromedial hypothalamus (VMH) Menin signaling diminished in aged mice, which contributes to systemic aging phenotypes and cognitive deficits. The effects of Menin on aging are mediated by neuroinflammatory changes and metabolic pathway signaling, accompanied by serine deficiency in VMH, while restoration of Menin in VMH reversed aging-related phenotypes.” Reference: “Hypothalamic Menin regulates systemic aging and cognitive decline” by Lige Leng, Ziqi Yuan, Xiao Su, Zhenlei Chen, Shangchen Yang, Meiqin Chen, Kai Zhuang, Hui Lin, Hao Sun, Huifang Li, Maoqiang Xue, Jun Xu, Jingqi Yan, Zhenyi Chen, Tifei Yuan and Jie Zhang, 16 March 2023, PLoS Biology. DOI: 10.1371/journal.pbio.3002033 A team of scientists led by James Godwin, Ph.D., of the MDI Biological Laboratory in Bar Harbor, Maine, has come a step closer to unraveling the mystery of why salamanders can regenerate while adult mammals cannot with the discovery of differences in molecular signaling that promote regeneration in the axolotl, a highly regenerative salamander, while blocking it in the adult mouse. Godwin is pictured here with a tank containing an axolotl. Credit: MDI Biological Laboratory Discovery in Salamanders by James W. Godwin, Ph.D., brings science closer to the development of regenerative medicine therapies. Many salamanders can readily regenerate a lost limb, but adult mammals, including humans, cannot. Why this is the case is a scientific mystery that has fascinated observers of the natural world for thousands of years. Now, a team of scientists led by James Godwin, Ph.D., of the MDI Biological Laboratory in Bar Harbor, Maine, has come a step closer to unraveling that mystery with the discovery of differences in molecular signaling that promote regeneration in the axolotl, a highly regenerative salamander, while blocking it in the adult mouse, which is a mammal with limited regenerative ability. “Scientists at the MDI Biological Laboratory have been relying on comparative biology to gain insights into human health since its founding in 1898,” said Hermann Haller, M.D., the institution’s president. “The discoveries enabled by James Godwin’s comparative studies in the axolotl and mouse are proof that the idea of learning from nature is as valid today as it was more than one hundred and twenty years ago.” The axolotl, a Mexican salamander that is now all but extinct in the wild, is a favorite model in regenerative medicine research because of its one-of-a-kind status as nature’s champion of regeneration. While most salamanders have some regenerative capacity, the axolotl can regenerate almost any body part, including brain, heart, jaws, limbs, lungs, ovaries, spinal cord, skin, tail, and more. A team of scientists led by James Godwin, Ph.D., of the MDI Biological Laboratory has come a step closer to unraveling the mystery of why salamanders can regenerate while adult mammals cannot with the discovery of differences in molecular signaling that promote regeneration in the axolotl, a highly regenerative salamander, while blocking it in the adult mouse. Credit: MDI Biological Laboratory Instead of regenerating lost or injured body parts, mammals typically form a scar at the site of an injury. Because the scar creates a physical barrier to regeneration, research in regenerative medicine at the MDI Biological Laboratory has focused on understanding why the axolotl doesn’t form a scar — or, why it doesn’t respond to injury in the same way that the mouse and other mammals do. “Our research shows that humans have untapped potential for regeneration,” Godwin said. “If we can solve the problem of scar formation, we may be able to unlock our latent regenerative potential. Axolotls don’t scar, which is what allows regeneration to take place. But once a scar has formed, it’s game over in terms of regeneration. If we could prevent scarring in humans, we could enhance quality of life for so many people.” The axolotl as a model for regeneration The axolotl, a Mexican salamander that is now all but extinct in the wild, is a favorite model in regenerative medicine research because of its one-of-a-kind status as nature’s champion of regeneration. While most salamanders have some regenerative capacity, the axolotl can regenerate almost any body part, including brain, heart, jaws, limbs, lungs, ovaries, spinal cord, skin, tail, and more. Since mammalian embryos and juveniles have the ability to regenerate — for instance, human infants can regenerate heart tissue and children can regenerate fingertips — it’s likely that adult mammals retain the genetic code for regeneration, raising the prospect that pharmaceutical therapies could be developed to encourage humans to regenerate tissues and organs lost to disease or injury instead of forming a scar. This graphical abstract from James Godwin, Ph.D., of the MDI Biological Laboratory in Bar Harbor, Maine, depicts the divergence between molecular signaling in the immune systems of the axolotl, a Mexican salamander that can readily regenerate limbs and other body parts, and the adult mouse, which cannot. Credit: MDI Biological Laboratory In his recent research, Godwin compared immune cells called macrophages in the axolotl to those in the mouse with the goal of identifying the quality in axolotl macrophages that promotes regeneration. The research builds on earlier studies in which Godwin found that macrophages are critical to regeneration: when they are depleted, the axolotl forms a scar instead of regenerating, just like mammals. The recent research found that although macrophage signaling in the axolotl and in the mouse were similar when the organisms were exposed to pathogens such as bacteria, funguses and viruses, when it came to exposure to injury it was a different story: the macrophage signaling in the axolotl promoted the growth of new tissue while that in the mouse promoted scarring. The paper on the research, entitled “Distinct TLR Signaling in the Salamander Response to Tissue Damage” was recently published in the journal Developmental Dynamics. In addition to Godwin, authors include Nadia Rosenthal, Ph.D., of The Jackson Laboratory; Ryan Dubuque and Katya E. Chan of the Australian Regenerative Medicine Institute (ARMI); and Sergej Nowoshilow, Ph.D., of the Research Institute of Molecular Pathology in Vienna, Austria. Special Issue: Salamander Models for Elucidating Mechanisms of Developmental Biology, Evolution & Regeneration/Repair: Part One Godwin, who holds a joint appointment with The Jackson Laboratory, was formerly associated with ARMI and Rosenthal is ARMI’s founding director. The MDI Biological Laboratory and ARMI have a partnership agreement to promote research and education on regeneration and the development of new therapies to improve human health. Specifically, the paper reported that the signaling response of a class of proteins called toll-like receptors (TLRs), which allow macrophages to recognize a threat such an infection or a tissue injury and induce a pro-inflammatory response, were “unexpectedly divergent” in response to injury in the axolotl and the mouse. The finding offers an intriguing window into the mechanisms governing regeneration in the axolotl. Being able to ‘pull the levers of regeneration’ The discovery of an alternative signaling pathway that is compatible with regeneration could ultimately lead to regenerative medicine therapies for humans. Though regrowing a human limb may not be realistic in the short term, significant opportunities exist for therapies that improve clinical outcomes in diseases in which scarring plays a major role in the pathology, including heart, kidney, liver, and lung disease. “We are getting closer to understanding how axolotl macrophages are primed for regeneration, which will bring us closer to being able to pull the levers of regeneration in humans,” Godwin said. “For instance, I envision being able to use a topical hydrogel at the site of a wound that is laced with a modulator that changes the behavior of human macrophages to be more like those of the axolotl.” Godwin, who is an immunologist, chose to examine the function of the immune system in regeneration because of its role in preparing the wound for repairs as the equivalent of a first responder at the site of an injury. His recent research opens the door to further mapping of critical nodes in TLR signaling pathways that regulate the unique immune environment enabling axolotl regeneration and scar-free repair. Reference: “Distinct toll-like receptor signaling in the salamander response to tissue damage” by Ryan J. Debuque, Sergej Nowoshilow, Katya E. Chan, Nadia A. Rosenthal and James W. Godwin, 1 April 2021, Developmental Dynamics. DOI: 10.1002/dvdy.340 Godwin’s research is supported by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant numbers P20GM103423 and P20GM104318 to the MDI Biological Laboratory. ARMI is supported by grants from the State Government of Victoria, Australia. The mouse studies were supported by Jackson Laboratory institutional funds. A team of scientists used AI and high-res imaging to chart the most detailed map of a human cell yet, revealing hidden protein functions and cancer-linked structures. Credit: SciTechDaily.com For the first time, scientists have built a detailed, interactive map of a human cell, revealing how thousands of proteins organize and work together. Using advanced imaging and AI tools like GPT-4, they uncovered hundreds of previously unknown protein functions and identified key cellular assemblies tied to childhood cancers. This map not only changes how we study cell biology but could also transform our understanding of disease at the molecular level. Mapping the Human Cell: A 400-Year Quest Scientists have been trying to map the human cell ever since the invention of the microscope more than 400 years ago. Yet, many parts of the cell remain largely unexplored. “ We know each of the proteins that exist in our cells, but how they fit together to then carry out the function of a cell still remains largely unknown across cell types,” said Leah Schaffer, Ph.D., a postdoctoral research scholar at UC San Diego School of Medicine. A New Cellular Atlas Emerges Now, Schaffer and her team at UC San Diego, along with collaborators from Stanford University, Harvard Medical School, and the University of British Columbia, have created a detailed, interactive map of U2OS cells — cells linked to pediatric bone tumors. By combining high-resolution microscopy with data on protein-protein interactions, the researchers mapped the internal structure and organization of proteins within these cells. Their work uncovered previously unknown protein functions and offers new insight into how mutations can drive diseases like childhood cancer. The map also provides a framework for creating similar atlases of other human cell types. The study was published in Nature on April 9, 2025. UC San Diego and Stanford University researchers have created a comprehensive map of the human U2OS cell. The map revealed previously unknown functions of proteins including C18orf21. Credit: Human Protein Atlas, Stanford University Why We Still Don’t Fully Understand Cells “Based on cell biology 101 and textbook pictures of cells, you might think that we understand everything about a cell. But what’s remarkable is that for no human cell type do we really have a proper parts catalog and assembly manual,” said co-senior author Trey Ideker, Ph.D., a professor of medicine, adjunct professor in Jacobs School of Engineering and member of Moores Cancer Center at UC San Diego. Building the Map: Imaging and Protein Interactions The researchers used a technique called affinity purification to isolate individual proteins and document their interactions with other proteins. In addition, they analyzed more than 20,000 images of the interior of cells marked with fluorescent dye to light up the location of proteins of interest from the Human Protein Atlas. Combining these data for more than 5,100 proteins revealed 275 distinct protein assemblies of different sizes within U2OS cells. “Historically, scientists have been biased by the notion that one gene codes for one protein that has one function,” said co-senior author Emma Lundberg, Ph.D., associate professor of bioengineering and of pathology at Stanford University. “However, there is now an increasing number of known multifunctional proteins, and while we’re probably still underestimating how many there are, this study demonstrates the importance of multimodal data integration to reveal these multifunctional properties.” The online, interactive map zooms out to reveal 275 protein assemblies within the U2OS cell. Credit: UC San Diego Health Sciences; Human Protein Atlas, Stanford University Uncovering Hidden Protein Functions The researchers discovered 975 previously unknown functions for proteins in the map. For example, C18orf21 — a recently discovered protein whose function was previously unknown — appears to be involved with RNA processing, according to the study, and the DPP9 protein, known to cut proteins at specific regions, is implicated in interferon signaling, which is important for fighting infection. The model drew upon a huge knowledge base it absorbed from the scientific literature on proteins, according to co-first author Clara Hu, a biomedical sciences doctoral candidate in Ideker’s lab. The researchers asked GPT-4 — a large language model artificial intelligence tool similar to ChatGPT — for the function of individual proteins and how they worked together in protein assemblies. This took a fraction of the time it would take a human researcher, says Hu. This GPT-4-based analysis tool, recently published in Nature Methods, summarized the common theme of each protein assembly and proposed names for them, which were used in the cell map. “We’re able to, in an unbiased manner, really look at how these parts fit together and how to look at them in the context of disease,” said Schaffer. A New Way to Understand Cancer Mutations In fact, by locating mutated proteins on the cell map, the researchers were able to identify 21 assemblies frequently mutated in childhood cancer. Within these groups, 102 mutated proteins were found to be strongly linked to cancer development, thanks to the study. The findings have implications for how cancer research is conducted at the molecular and cellular level. “We need to stop looking at the level of individual mutations, which are very rare, sporadic, and almost never recur in the same way twice, and start looking at the common machinery inside of cells that is disrupted or hijacked by these mutations,” said Ideker. Zooming Through the Cell Like Google Maps Schaffer says browsing the U2OS cell map is similar to navigating an online geographical map. “You’re able to really explore, zoom in, and see what proteins are part of these different communities, and then see where those communities are located,” she said. “As you increase resolution, you can see even more detail-level information,” said Hu. The team is currently working on resolving the map even further so that users can zoom in as much as they want at a high resolution. A Blueprint for Future Disease Research The researchers think the U2OS cell atlas will not only facilitate a better understanding of childhood cancers, but will also provide a blueprint for scientists who want to map other cell types, use artificial intelligence tools to uncover the function of poorly-understand proteins and protein complexes, and decipher the mechanisms behind a wide variety of disease processes. Reference: “Multimodal cell maps as a foundation for structural and functional genomics” by Leah V. Schaffer, Mengzhou Hu, Gege Qian, Kyung-Mee Moon, Abantika Pal, Neelesh Soni, Andrew P. Latham, Laura Pontano Vaites, Dorothy Tsai, Nicole M. Mattson, Katherine Licon, Robin Bachelder, Anthony Cesnik, Ishan Gaur, Trang Le, William Leineweber, Aji Palar, Ernst Pulido, Yue Qin, Xiaoyu Zhao, Christopher Churas, Joanna Lenkiewicz, Jing Chen, Keiichiro Ono, Dexter Pratt, Peter Zage, Ignacia Echeverria, Andrej Sali, J. Wade Harper, Steven P. Gygi, Leonard J. Foster, Edward L. Huttlin, Emma Lundberg and Trey Ideker, 9 April 2025, Nature. DOI: 10.1038/s41586-025-08878-3 Additional co-authors on the study include: Gege Qian, Dorothy Tsai, Nicole M. Mattson, Katherine Licon, Robin Bachelder, Yue Qin, Xiaoyu Zhao, Christopher Churas, Joanna Lenkiewicz, Jing Chen from University of California San Diego, Kei Ono, Peter Zage, all at UC San Diego; Kyung-Mee Moon and Leonard J. Foster at University of British Columbia; Abantika Pal, Neelesh Soni, Andrew P. Latham Aji Palar, Andrej Sali, and Ignacia Echeverria at University of California San Francisco; Steven P. Gygi, Laura Pontano Vaites, Edward L. Huttlin, and J. Wade Harper at Harvard Medical School; Anthony Cesnik, Ishan Gaur, Trang Le, William Leineweber, Ernst Pulido at Stanford University. The study was funded, in part, by the National Institutes of Health (NIH) (grants: Bridge2AI Program OT2 OD032742, U54 CA274502, R01GM083960, P41GM109824, U24 HG006673), Schmidt Futures, the Wallenberg Foundation (2021.0346) and the Göran Gustafsson Foundation. RRG455KLJIEVEWWF 三希樓春酒活動適合在這裡辦嗎? 》公益路美食推薦|吃貨實測十間真心話TANG Zhan 湯棧真的有那麼好吃嗎? 》台中公益路美食攻略|精選10間超人氣餐廳,一次帶你吃遍熱門口袋名單印月餐廳套餐划算嗎? 》公益路餐廳怎麼選?10大必吃名單給你 |
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